Mike Braun is great, but he has a day job at the fire department. He has a ton of FE knowledge.
The two Cobra shops that always seem to be highly recommended in Northern California are Top of the Hill/Techcraft in Livermore and Hall Fabrication in Benicia. Both are a distance from San Jose though. Also, Kevin Sittner of Precision Machine in Lodi has a great reputation.
I just remembered that there's another great shop that's actually in San Jose. Their name is Valaya Racing.
www.valayaracing.com. I believe they work on everything, but they're huge with exotics, Vipers and newer Vettes. The owners, Ted and Al, are very nice guys. If I remember correctly, their hourly rate was around $119/hour.
Good luck.